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  1. 1.
    rifiComparative::annot_g
    The result of gff3_preprocessing of gff3 file A list containing all necessary information from a gff file for adjusting_HLToInt and visualization.
    rda| rds
    list
  2. 2.
    rifiComparative::data_combined_minimal
    The result of joining_by_row for inp_s and inp_f example data A data frame containing the output of joining_by_row as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 49
  3. 3.
    rifiComparative::df_comb_minimal
    The result of joining_by_column for data_combined_minimal example data A data frame containing the output of joining_by_row as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300 x 18
  4. 4.
    rifiComparative::df_mean_minimal
    The result of adjusting_HLToInt for stats_df_comb_minimal and annotation example data A data frame containing the output of adjusting_HLToInt as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|52 x 15
  5. 5.
    rifiComparative::differential_expression
    An example data frame from Synechosystis PCC 6803 differential probes expression obtained from limma package and only interesting variables were selected. The data frame was used entirely.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55508 x 4
  6. 6.
    rifiComparative::fragment_int
    The result of fragmentation for df_comb_minimal example data A data frame containing the output of fragmentation as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 24
  7. 7.
    rifiComparative::inp_f
    The result of loading_fun for stats_se_cdt2 example data Two data frame containing the output of loading_fun as second element of a list.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 49
  8. 8.
    rifiComparative::inp_s
    The result of loading_fun for stats_se_cdt1 example data Two data frame containing the output of loading_fun as first element of a list.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 49
  9. 9.
    rifiComparative::pen_HL
    The result of penalties for df_comb_minimal example data. A list containing the output from penalties including the logbook and two penalty objects.
    json| rda| rds
    list
  10. 10.
    rifiComparative::pen_int
    The result of penalties for df_comb_minimal example data. A list containing the output from penalties including the logbook and two penalty objects.
    json| rda| rds
    list
  11. 11.
    rifiComparative::penalties_df
    The result of penalties for df_comb_minimal example data A data frame containing the output of penalties as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 20
  12. 12.
    rifiComparative::stats_df_comb_minimal
    The result of statistics for fragment_int example data A data frame containing the output of statistics as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 26
  13. 13.
    rifiComparative::stats_se_cdt1
    An example SummarizedExperiment from Synechosystis PCC 6803 first condition obtained from rifi_statistics and used as input for rifiComparative
    rda| rds
    RangedSummarizedExperiment
  14. 14.
    rifiComparative::stats_se_cdt2
    An example SummarizedExperiment from Synechosystis PCC 6803 second condition obtained from rifi_statistics and used as input for rifiComparative
    rda| rds
    RangedSummarizedExperiment